PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family DBB
Protein Properties Length: 243aa    MW: 27062.4 Da    PI: 6.2724
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.5e-08444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ +e+ +++lfC +++  lC+ C l++H+       Ht+
  XP_004500780.1  4 QCDVCEKVQASLFCPSDEAALCHGCDLSIHHAnklatkHTR 44
                    7******88********************744478878875 PP

2zf-B_box27.37.4e-095692438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    + C+ ++ek+   fC++++  +C++C l++H+   Ht
  XP_004500780.1 56 PLCDICQEKRGYVFCQEDRAIVCRECDLSIHRAneHT 92
                    78*****************************768865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000212.99E-7347No hitNo description
PfamPF006433.4E-5444IPR000315B-box-type zinc finger
SMARTSM003361.2E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.92653100IPR000315B-box-type zinc finger
SMARTSM003364.2E-1353100IPR000315B-box-type zinc finger
CDDcd000216.11E-956100No hitNo description
PfamPF006434.5E-75692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIQCDVCEK VQASLFCPSD EAALCHGCDL SIHHANKLAT KHTRFSLIHL HSKEFPLCDI  60
CQEKRGYVFC QEDRAIVCRE CDLSIHRANE HTEKHNRFLL SGVKLSSNSL DPESSSSTNI  120
IERSVSNENG SSYGNKVEEN MGSESGSVST SSISEYLIET IPGYCFEDFL DASFAPNAFC  180
KNNCSEFKDQ DIHVSKYLFP QVTCVPLAQV QSTQLTNPIP LNLPRIDSTV GVKEIPGKSR  240
HSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196062e-49CU019606.6 M.truncatula DNA sequence from clone MTH2-77H1 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500780.11e-180PREDICTED: B-box zinc finger protein 20-like
SwissprotQ9LQZ77e-57BBX21_ARATH; B-box zinc finger protein 21
TrEMBLD3YBC11e-113D3YBC1_TRIRP; Salt tolerance-like protein
STRINGGLYMA11G12060.17e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-52salt tolerance homolog2